Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Re nest parallelize #27

Merged
merged 5 commits into from
Nov 7, 2024
Merged

Conversation

Oddant1
Copy link
Collaborator

@Oddant1 Oddant1 commented Aug 22, 2024

Re nest the pipelines so things will parallelize

@Oddant1
Copy link
Collaborator Author

Oddant1 commented Aug 22, 2024

blocked by qiime2/qiime2#790

@colinbrislawn
Copy link

colinbrislawn commented Sep 10, 2024

Looks like this plugin is slower when adding --parallel!
Something was up with --parallel when I ran it

Is this PR related or should I open a new issue?

@Oddant1
Copy link
Collaborator Author

Oddant1 commented Sep 12, 2024

@colinbrislawn this PR is related

@Oddant1
Copy link
Collaborator Author

Oddant1 commented Oct 22, 2024

@ebolyen and @gregcaporaso now that qiime2/qiime2#790 is merged this ought to work as intended

@gregcaporaso gregcaporaso self-assigned this Oct 25, 2024
@gregcaporaso
Copy link
Member

gregcaporaso commented Nov 4, 2024

@Oddant1, fyi I rebased to test with the most recent environment files - that's what the force-pushes are, in case you're wondering.

Copy link
Member

@gregcaporaso gregcaporaso left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

All changes look right, thanks @Oddant1! Just doing some local testing of serial v parallel runs - if all good there, this is ready for merge.

@gregcaporaso gregcaporaso merged commit 21f97b8 into caporaso-lab:main Nov 7, 2024
3 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants